Package: CALANGO
Type: Package
Title: Comparative Analysis with Annotation-Based Genomic Components
Version: 1.0.20
Date: 2024-09-03
Language: en-US
Authors@R: c(person("Francisco", "Lobo",
    email   = "franciscolobo@gmail.com",
    role    = c("aut")),
    person("Felipe", "Campelo",
    email   = "fcampelo@gmail.com",
    role    = c("aut", "cre")),
    person("Jorge Augusto", "Hongo",
    email   = "jorgeahongo@gmail.com",
    role    = "aut"),
    person("Giovanni", "Marques de Castro",
    email   = "giomcastro@gmail.com",
    role    = "aut"),
    person("Gabriel", "Almeida",
    email   = "gabriel.magno@gmail.com",
    role    = c("sad", "dnc")))
Maintainer: Felipe Campelo <fcampelo@gmail.com>
Description: A first-principle, phylogeny-aware comparative genomics
        tool for investigating associations between terms used to
        annotate genomic components (e.g., Pfam IDs, Gene Ontology
        terms,) with quantitative or rank variables such as number of
        cell types, genome size, or density of specific genomic
        elements. See the project website for more information,
        documentation and examples, and
        <doi:10.1016/j.patter.2023.100728> for the full paper.
License: GPL-2
Depends: R (>= 3.6.0)
Imports: assertthat (>= 0.2.1), pbmcapply (>= 1.5.0), ape (>= 5.3.0),
        rmarkdown (>= 2.1.0), nlme (>= 3.1.0), BiocManager (>=
        1.30.10), dendextend (>= 1.15.2), heatmaply (>= 1.1.0), ggplot2
        (>= 2.3.2), plotly (>= 4.9.2), DT (>= 0.13), htmltools (>=
        0.5.0), htmlwidgets (>= 1.5.1), pkgdown (>= 1.5.1), knitr (>=
        1.28)
Suggests: AnnotationDbi, KEGGREST, GO.db
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://labpackages.github.io/CALANGO/
BugReports: https://github.com/fcampelo/CALANGO/issues/
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libwebp-dev libxml2-dev libssl-dev
Repository: https://fcampelo.r-universe.dev
Date/Publication: 2024-09-05 07:34:47 UTC
RemoteUrl: https://github.com/fcampelo/calango
RemoteRef: HEAD
RemoteSha: 9126748e3130c6d1d75442c2f1dc00708f0e411c
NeedsCompilation: no
Packaged: 2026-07-06 07:18:17 UTC; root
Author: Francisco Lobo [aut],
  Felipe Campelo [aut, cre],
  Jorge Augusto Hongo [aut],
  Giovanni Marques de Castro [aut],
  Gabriel Almeida [sad, dnc]